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    LOC104825612 transcription termination factor MTERF5, chloroplastic [ Tarenaya hassleriana ]

    Gene ID: 104825612, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC104825612
    Gene description
    transcription termination factor MTERF5, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tarenaya hassleriana
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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    Genomic context

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    See LOC104825612 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010967498.1 (193959..196479, complement)

    NW_010967498.1Genomic Context describing neighboring genes Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene uncharacterized LOC104825725 Neighboring gene uncharacterized protein At3g27210-like Neighboring gene uridine kinase-like protein 1, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010967498.1 Unplaced Scaffold Reference ASM46358v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription termination factor MTERF5, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM46358v1

    Genomic

    1. NW_010967498.1 Reference ASM46358v1

      Range
      193959..196479 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010557971.2 → XP_010556273.1  transcription termination factor MTERF5, chloroplastic isoform X2

      Conserved Domains (1) summary
      cl19765
      Location:213 → 469
      mTERF; mTERF

    2. XM_010557970.2 → XP_010556272.1  transcription termination factor MTERF5, chloroplastic isoform X1

      Conserved Domains (1) summary
      cl19765
      Location:214 → 470
      mTERF; mTERF
    Nucleotide Protein
    Heading Accession and Version

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