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    dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 [ Esox lucius (northern pike) ]

    Gene ID: 105025506, updated on 14-Nov-2024

    Summary

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    Gene symbol
    dnph1
    Gene description
    2'-deoxynucleoside 5'-phosphate N-hydrolase 1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Esox lucius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
    Also known as
    RCL
    Orthologs
    human zebrafish all
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    Genomic context

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    See dnph1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current fEsoLuc1.pri (GCF_011004845.1) 6 NC_047574.1 (25516241..25519250, complement)
    103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG06 NC_025973.4 (25780811..25790810, complement)

    Chromosome 6 - NC_047574.1Genomic Context describing neighboring genes Neighboring gene tight junction associated protein 1 (peripheral) Neighboring gene delta-like 2 homolog (Drosophila) Neighboring gene protein phosphatase 2, regulatory subunit B', delta Neighboring gene male-enhanced antigen 1 Neighboring gene zinc finger protein 318

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5-hydroxymethyl-dUMP N-hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in deoxyribonucleoside monophosphate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5-hydroxymethyl-dUMP N-hydrolase
    Names
    c-Myc-responsive protein Rcl
    NP_001291112.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304183.1 → NP_001291112.1  5-hydroxymethyl-dUMP N-hydrolase

      See identical proteins and their annotated locations for NP_001291112.1

      Status: PROVISIONAL

      Source sequence(s)
      BT078835
      UniProtKB/Swiss-Prot
      C1BW56
      Conserved Domains (1) summary
      cl23749
      Location:3 → 111
      TIR_2; TIR domain

    RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEsoLuc1.pri Primary Assembly

    Genomic

    1. NC_047574.1 Reference fEsoLuc1.pri Primary Assembly

      Range
      25516241..25519250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C1BW56.1 GenPept UniProtKB/Swiss-Prot:C1BW56

    Gene LinkOut

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