U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC105049897 G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 [ Elaeis guineensis (African oil palm) ]

    Gene ID: 105049897, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105049897
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Elaeis guineensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105049897 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current EG5 (GCF_000442705.1) 1 NC_025993.1 (26063141..26096588)

    Chromosome 1 - NC_025993.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 Neighboring gene receptor-like serine/threonine-protein kinase SD1-8 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_025993.1 Chromosome 1 Reference EG5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330; G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290; receptor-like serine/threonine-protein kinase SD1-8

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Elaeis guineensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EG5 Primary Assembly

    Genomic

    1. NC_025993.1 Reference EG5 Primary Assembly

      Range
      26063141..26096588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029266624.1 → XP_029122457.1  receptor-like serine/threonine-protein kinase SD1-8 isoform X3

      UniProtKB/TrEMBL
      A0A8N4IAQ0
      Conserved Domains (4) summary
      cd01098
      Location:334 → 416
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:503 → 768
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:206 → 315
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:76 → 176
      B_lectin; D-mannose binding lectin

    2. XM_010929269.2 → XP_010927571.1  receptor-like serine/threonine-protein kinase SD1-8 isoform X2

      UniProtKB/TrEMBL
      A0A6I9RS98
      Conserved Domains (6) summary
      smart00108
      Location:31 → 147
      B_lectin; Bulb-type mannose-specific lectin
      smart00221
      Location:498 → 768
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:503 → 768
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:206 → 315
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:72 → 176
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:336 → 401
      PAN_2; PAN-like domain

    3. XM_010929684.3 → XP_010927986.1  G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1

      UniProtKB/TrEMBL
      A0A6I9RKA5
      Conserved Domains (6) summary
      smart00108
      Location:38 → 153
      B_lectin; Bulb-type mannose-specific lectin
      smart00221
      Location:504 → 774
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:509 → 774
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:212 → 321
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:78 → 182
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:342 → 407
      PAN_2; PAN-like domain

    4. XM_029266627.1 → XP_029122460.1  G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 isoform X4

      UniProtKB/TrEMBL
      A0A8N4IFK3
      Conserved Domains (2) summary
      pfam11883
      Location:234 → 277
      DUF3403; Domain of unknown function (DUF3403)
      cl21453
      Location:2 → 230
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases