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    LOC105180973 uncharacterized LOC105180973 [ Harpegnathos saltator (Jerdon's jumping ant) ]

    Gene ID: 105180973, updated on 1-Oct-2024

    Summary

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    Gene symbol
    LOC105180973
    Gene description
    uncharacterized LOC105180973
    Locus tag
    EAI_04417
    See related
    EnsemblRapid:LOC105180973
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Harpegnathos saltator
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Harpegnathos
    Orthologs
    honey bee all
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    Genomic context

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    See LOC105180973 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current Hsal_v8.5 (GCF_003227715.1) Unplaced Scaffold NW_020230045.1 (2068953..2247809)
    101 previous assembly HarSal_1.0 (GCF_000147195.1) Unplaced Scaffold NW_011648200.1 (90734..259925, complement)

    NW_020230045.1Genomic Context describing neighboring genes Neighboring gene metabotropic glutamate receptor 8 Neighboring gene zinc finger protein 568-like Neighboring gene filamin-A Neighboring gene Succinyl-coenzyme A synthetase beta subunit, GDP-forming

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC105180973
    Names
    E3 ubiquitin-protein ligase Rnf220
    RING finger protein 220

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Harpegnathos saltator Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Hsal_v8.5

    Genomic

    1. NW_020230045.1 Reference Hsal_v8.5

      Range
      2068953..2247809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025299226.1 → XP_025155011.1  uncharacterized protein LOC105180973 isoform X1

      Related
      XP_025155011.1, XM_025299226.1
      Conserved Domains (2) summary
      pfam15926
      Location:411 → 664
      RNF220; E3 ubiquitin-protein ligase RNF220
      cd16563
      Location:735 → 798
      RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins

    2. XM_025299227.1 → XP_025155012.1  uncharacterized protein LOC105180973 isoform X2

      Related
      XP_025155012.1, XM_025299227.1
      Conserved Domains (2) summary
      pfam15926
      Location:411 → 664
      RNF220; E3 ubiquitin-protein ligase RNF220
      cd16563
      Location:735 → 775
      RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins

    3. XM_019840413.2 → XP_019695972.2  uncharacterized protein LOC105180973 isoform X3

      Related
      XP_019695972.2, XM_019840413.2
      Conserved Domains (2) summary
      pfam15926
      Location:387 → 640
      RNF220; E3 ubiquitin-protein ligase RNF220
      cd16563
      Location:711 → 774
      RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins

    4. XM_025299228.1 → XP_025155013.1  uncharacterized protein LOC105180973 isoform X4

      Related
      XP_025155013.1, XM_025299228.1
      Conserved Domains (3) summary
      pfam15926
      Location:341 → 594
      RNF220; E3 ubiquitin-protein ligase RNF220
      cd16563
      Location:665 → 728
      RING-HC_RNF220; RING finger, HC subclass, found in RING finger protein 220 (RNF220) and similar proteins
      cl28410
      Location:277 → 390
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
    Nucleotide Protein Strain
    Heading Accession and Version

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