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    LINC02152 long intergenic non-protein coding RNA 2152 [ Homo sapiens (human) ]

    Gene ID: 105371071, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02152provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2152provided by HGNC
    Primary source
    HGNC:HGNC:53014
    See related
    AllianceGenome:HGNC:53014
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.5) See more
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    Genomic context

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    See LINC02152 in Genome Data Viewer
    Location:
    16p13.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (8296431..8299772)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (8328545..8331886)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (8346433..8349774)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371069 Neighboring gene MPRA-validated peak2490 silencer Neighboring gene MPRA-validated peak2491 silencer Neighboring gene MPRA-validated peak2492 silencer Neighboring gene uncharacterized LOC124903641 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:8187641-8188327 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:8228444-8229381 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:8229382-8230320 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:8230888-8232087 Neighboring gene NANOG hESC enhancer GRCh37_chr16:8287386-8287923 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:8420345-8420980 Neighboring gene uncharacterized LOC105371072 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:8543873-8544434 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:8555315-8555834 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:8555835-8556353 Neighboring gene ribosomal protein S14 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Long Non-Coding RNA: Potential Diagnostic and Therapeutic Biomarker for Major Depressive Disorder. Cui X, et al. Med Sci Monit, 2016 Dec 31. PMID 28039689, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_184339.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC018767

    2. NR_184340.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC018767

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      8296431..8299772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      8328545..8331886
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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