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    usp retinoid X receptor ultraspiracle [ Plutella xylostella (diamondback moth) ]

    Gene ID: 105388926, updated on 26-Nov-2024

    Summary

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    Gene symbol
    usp
    Gene description
    retinoid X receptor ultraspiracle
    Locus tag
    PLXY1_LOCUS16534
    See related
    EnsemblRapid:ENSPXYG00000021540
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Plutella xylostella
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Plutellidae; Plutella
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    fruit fly all
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    Genomic context

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    See usp in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current ilPluXylo3.1 (GCF_932276165.1) 4 NC_063984.1 (8126529..8148494, complement)
    102 previous assembly Haplomerged_assembly (GCF_905116875.1) Unplaced Scaffold NW_024011347.1 (8271982..8314755, complement)

    Chromosome 4 - NC_063984.1Genomic Context describing neighboring genes Neighboring gene long-chain fatty acid transport protein 4 Neighboring gene uncharacterized protein C05D11.1 Neighboring gene RB1-inducible coiled-coil protein 1 Neighboring gene glucose-6-phosphate 1-dehydrogenase Zw

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cocoon-Spinning Behavior and 20-Hydroxyecdysone Regulation of Fibroin Genes in Plutella xylostella. Shi Y, et al. Front Physiol, 2020. PMID 33384607, Free PMC Article
    2. The endoparasitoid, Cotesia vestalis, regulates host physiology by reprogramming the neuropeptide transcriptional network. Shi M, et al. Sci Rep, 2015 Feb 2. PMID 25640113, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to ecdysone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of activator ecdysone receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoid X receptor ultraspiracle
    Names
    protein ultraspiracle homolog
    ultraspiracle protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309115.1 → NP_001296044.1  retinoid X receptor ultraspiracle

      See identical proteins and their annotated locations for NP_001296044.1

      Status: PROVISIONAL

      Source sequence(s)
      JN410831
      UniProtKB/TrEMBL
      G5CV12
      Related
      ENSPXYP00000024810.1, ENSPXYT00000035519.1
      Conserved Domains (2) summary
      cd06943
      Location:156 → 386
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:58 → 134
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

    RefSeqs of Annotated Genomes: Plutella xylostella Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ilPluXylo3.1

    Genomic

    1. NC_063984.1 Reference ilPluXylo3.1

      Range
      8126529..8148494 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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