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    SEMA6C semaphorin 6C [ Macaca nemestrina (pig-tailed macaque) ]

    Gene ID: 105497838, updated on 13-Mar-2024

    Summary

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    Gene symbol
    SEMA6C
    Gene description
    semaphorin 6C
    See related
    Ensembl:ENSMNEG00000035534
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca nemestrina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA6C in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012012022.1 (1457549..1472638, complement)

    NW_012012022.1Genomic Context describing neighboring genes Neighboring gene CDC42 small effector 1 Neighboring gene MLLT11 transcription factor 7 cofactor Neighboring gene GA binding protein transcription factor subunit beta 2 Neighboring gene LysM domain containing 1 Neighboring gene TNF alpha induced protein 8 like 2 Neighboring gene sodium channel modifier 1 Neighboring gene tropomodulin 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012012022 Unplaced Scaffold Reference Mnem_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-6C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mnem_1.0

    Genomic

    1. NW_012012022.1 Reference Mnem_1.0

      Range
      1457549..1472638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011769279.2 → XP_011767581.1  semaphorin-6C isoform X1

      See identical proteins and their annotated locations for XP_011767581.1

      UniProtKB/TrEMBL
      A0A2K6CJV2, A0A2K6CK02
      Related
      ENSMNEP00000023928.1, ENSMNET00000048194.1
      Conserved Domains (2) summary
      cd11268
      Location:53 → 517
      Sema_6C; The Sema domain, a protein interacting module, of semaphorin 6C (Sema6C, also called semaphorin Y)
      pfam01437
      Location:518 → 570
      PSI; Plexin repeat

    2. XM_011769282.2 → XP_011767584.1  semaphorin-6C isoform X2

      UniProtKB/TrEMBL
      A0A2K6CJS0, A0A2K6CJZ9
      Related
      ENSMNEP00000023914.1, ENSMNET00000048180.1
      Conserved Domains (2) summary
      cd11268
      Location:53 → 517
      Sema_6C; The Sema domain, a protein interacting module, of semaphorin 6C (Sema6C, also called semaphorin Y)
      pfam01437
      Location:518 → 570
      PSI; Plexin repeat
    Nucleotide Protein
    Heading Accession and Version

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