U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    OPN1SW opsin 1, short wave sensitive [ Microcebus murinus (gray mouse lemur) ]

    Gene ID: 105884845, updated on 13-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    OPN1SW
    Gene description
    opsin 1, short wave sensitive
    See related
    Ensembl:ENSMICG00000045275
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcebus murinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Cheirogaleidae; Microcebus
    Also known as
    SWS; SWS1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See OPN1SW in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Mmur_3.0 (GCF_000165445.2) 11 NC_033670.1 (22586617..22593572)
    100 previous assembly Mmur_2.0 (GCF_000165445.1) Unplaced Scaffold NW_012198463.1 (3854157..3860061, complement)

    Chromosome 11 - NC_033670.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 136 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene calumenin Neighboring gene golgi associated RAB2 interactor 1B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    short-wave-sensitive opsin 1
    Names
    opsin 1 (cone pigments), short-wave-sensitive
    short-wave sensitive type 1 opsin
    short-wavelength-sensitive opsin protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Microcebus murinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmur_3.0 Primary Assembly

    Genomic

    1. NC_033670.1 Reference Mmur_3.0 Primary Assembly

      Range
      22586617..22593572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012789158.1 → XP_012644612.1  short-wave-sensitive opsin 1 isoform X3

      UniProtKB/TrEMBL
      A0A8B7I1U0, M9T1Y7
      Conserved Domains (2) summary
      pfam00001
      Location:14 → 265
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:14 → 283
      7tm_4; Olfactory receptor

    2. XM_012789157.2 → XP_012644611.1  short-wave-sensitive opsin 1 isoform X2

      UniProtKB/TrEMBL
      A0A8B7I3V6, M9T1Y7, M9T7N7
      Conserved Domains (1) summary
      pfam00001
      Location:53 → 304
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    3. XM_012789156.1 → XP_012644610.1  short-wave-sensitive opsin 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C5Y1D6, M9T1Y7
      Related
      ENSMICP00000044296.1, ENSMICT00000069310.1
      Conserved Domains (2) summary
      pfam00001
      Location:53 → 304
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:41 → 322
      7tm_4; Olfactory receptor
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.