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    LOC105940388 cyclin-dependent kinase 5 activator 1 [ Fundulus heteroclitus (mummichog) ]

    Gene ID: 105940388, updated on 20-Aug-2024

    Summary

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    Gene symbol
    LOC105940388
    Gene description
    cyclin-dependent kinase 5 activator 1
    See related
    EnsemblRapid:ENSFHEG00000016446
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fundulus heteroclitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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    Genomic context

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    See LOC105940388 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 16 NC_046376.1 (33509787..33518286, complement)
    101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224511.1 (300007..310064)

    Chromosome 16 - NC_046376.1Genomic Context describing neighboring genes Neighboring gene vesicle-fusing ATPase-like Neighboring gene N-ethylmaleimide-sensitive factor a Neighboring gene 26S proteasome non-ATPase regulatory subunit 11A Neighboring gene RPA interacting protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of protein kinase 5 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-dependent kinase 5 activator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MU-UCD_Fhet_4.1 Primary Assembly

    Genomic

    1. NC_046376.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

      Range
      33509787..33518286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012882905.3 → XP_012738359.2  cyclin-dependent kinase 5 activator 1

      UniProtKB/TrEMBL
      A0A147B0C3
      Related
      ENSFHEP00000014863.2, ENSFHET00000032963.2
      Conserved Domains (1) summary
      pfam03261
      Location:20 → 314
      CDK5_activator; Cyclin-dependent kinase 5 activator protein
    Nucleotide Protein
    Heading Accession and Version

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