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    LOC106316674 phospholipase D alpha 2 [ Brassica oleracea (wild cabbage) ]

    Gene ID: 106316674, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LOC106316674
    Gene description
    phospholipase D alpha 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    Also known as
    PLD2
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    Genomic context

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    See LOC106316674 in Genome Data Viewer
    Location:
    chromosome: C1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current BOL (GCF_000695525.1) C1 NC_027748.1 (37349542..37353441, complement)

    Chromosome C1 - NC_027748.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding domain-containing protein 11-like Neighboring gene uncharacterized LOC106316653 Neighboring gene uncharacterized LOC106316689 Neighboring gene signal peptidase complex catalytic subunit SEC11A-like Neighboring gene putative disease resistance protein At3g15700

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_027748.1 Chromosome C1 Reference BOL Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylcholine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipase D alpha 2
    Names
    Choline phosphatase 2
    PLD 2
    Phosphatidylcholine-hydrolyzing phospholipase D 2
    phospholipase D2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BOL Primary Assembly

    Genomic

    1. NC_027748.1 Reference BOL Primary Assembly

      Range
      37349542..37353441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013754561.1 → XP_013610015.1  phospholipase D alpha 2

      UniProtKB/Swiss-Prot
      O49981, O82548, O82549, P55939
      UniProtKB/TrEMBL
      A0A0D3ADA8, A0A3P6F466, A0A3P6FGA7
      Conserved Domains (1) summary
      PLN02270
      Location:1 → 812
      PLN02270; phospholipase D alpha

    2. XM_013754569.1 → XP_013610023.1  phospholipase D alpha 2

      UniProtKB/Swiss-Prot
      O49981, O82548, O82549, P55939
      UniProtKB/TrEMBL
      A0A0D3ADA8, A0A3P6F466, A0A3P6FGA7
      Conserved Domains (1) summary
      PLN02270
      Location:1 → 812
      PLN02270; phospholipase D alpha
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P55939.2 GenPept UniProtKB/Swiss-Prot:P55939

    Gene LinkOut

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