U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC106339571 thiocyanate methyltransferase 1 [ Brassica oleracea (wild cabbage) ]

    Gene ID: 106339571, updated on 30-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC106339571
    Gene description
    thiocyanate methyltransferase 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    Also known as
    tmt1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC106339571 in Genome Data Viewer
    Location:
    chromosome: C4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current BOL (GCF_000695525.1) C4 NC_027751.1 (2844185..2846295, complement)

    Chromosome C4 - NC_027751.1Genomic Context describing neighboring genes Neighboring gene polygalacturonase-like Neighboring gene polygalacturonase Neighboring gene probable thiol methyltransferase 1 Neighboring gene probable thiol methyltransferase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_027751.1 Chromosome C4 Reference BOL Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cloning and functional expression of two plant thiol methyltransferases: a new class of enzymes involved in the biosynthesis of sulfur volatiles. Attieh J, et al. Plant Mol Biol, 2002 Oct. PMID 12369626
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    thiocyanate methyltransferase 1
    Names
    thiol methyltransferase 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BOL Primary Assembly

    Genomic

    1. NC_027751.1 Reference BOL Primary Assembly

      Range
      2844185..2846295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013778402.1 → XP_013633856.1  thiocyanate methyltransferase 1 isoform X1

      Conserved Domains (2) summary
      COG0500
      Location:59 → 194
      SmtA; SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
      cl17173
      Location:48 → 183
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. XM_013778403.1 → XP_013633857.1  thiocyanate methyltransferase 1 isoform X2

      UniProtKB/TrEMBL
      A0A0D3BPN3
      Conserved Domains (2) summary
      COG0500
      Location:91 → 248
      SmtA; SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
      pfam05724
      Location:53 → 237
      TPMT; Thiopurine S-methyltransferase (TPMT)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93V78.1 GenPept UniProtKB/Swiss-Prot:Q93V78

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases