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    Tomosyn syntaxin-binding protein tomosyn [ Dinoponera quadriceps ]

    Gene ID: 106742295, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Tomosyn
    Gene description
    syntaxin-binding protein tomosyn
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dinoponera quadriceps
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Dinoponera
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Tomosyn in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current ASM131382v1 (GCF_001313825.1) Unplaced Scaffold NW_014554836.1 (205536..234418)

    NW_014554836.1Genomic Context describing neighboring genes Neighboring gene alanine--tRNA ligase, mitochondrial Neighboring gene mitochondrial GTPase 1 Neighboring gene protein tyrosine phosphatase, mitochondrial 1 Neighboring gene zinc finger protein Elbow Neighboring gene uncharacterized LOC106742277

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_014554836.1 Unplaced Scaffold Reference ASM131382v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables myosin II binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-binding protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Dinoponera quadriceps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM131382v1

    Genomic

    1. NW_014554836.1 Reference ASM131382v1

      Range
      205536..234418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014615112.1 → XP_014470598.1  syntaxin-binding protein 5 isoform X4

      UniProtKB/TrEMBL
      A0A6P3WWU0
      Conserved Domains (5) summary
      COG2319
      Location:51 → 260
      WD40; WD40 repeat [General function prediction only]
      cd15873
      Location:1150 → 1210
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      pfam08366
      Location:265 → 371
      LLGL; LLGL2
      sd00039
      Location:51 → 87
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:37 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_014615109.1 → XP_014470595.1  syntaxin-binding protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A6P3WX08
      Conserved Domains (5) summary
      COG2319
      Location:51 → 260
      WD40; WD40 repeat [General function prediction only]
      cd15873
      Location:1296 → 1356
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      pfam08366
      Location:265 → 371
      LLGL; LLGL2
      sd00039
      Location:51 → 87
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:37 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_014615111.1 → XP_014470597.1  syntaxin-binding protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A6P3WXE7
      Conserved Domains (6) summary
      COG2319
      Location:51 → 260
      WD40; WD40 repeat [General function prediction only]
      cd15873
      Location:1268 → 1328
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      pfam08366
      Location:265 → 371
      LLGL; LLGL2
      pfam08596
      Location:1101 → 1205
      Lgl_C; Lethal giant larvae(Lgl) like, C-terminal
      sd00039
      Location:51 → 87
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:37 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_014615110.1 → XP_014470596.1  syntaxin-binding protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A6P3WWU4
      Conserved Domains (5) summary
      COG2319
      Location:51 → 260
      WD40; WD40 repeat [General function prediction only]
      cd15873
      Location:1293 → 1353
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      pfam08366
      Location:265 → 371
      LLGL; LLGL2
      sd00039
      Location:51 → 87
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:37 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_014615114.1 → XP_014470600.1  syntaxin-binding protein 5 isoform X6

      UniProtKB/TrEMBL
      A0A6P3WX13
      Conserved Domains (5) summary
      COG2319
      Location:51 → 260
      WD40; WD40 repeat [General function prediction only]
      cd15873
      Location:1031 → 1091
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      pfam08366
      Location:265 → 371
      LLGL; LLGL2
      sd00039
      Location:51 → 87
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:37 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. XM_014615113.1 → XP_014470599.1  syntaxin-binding protein 5 isoform X5

      UniProtKB/TrEMBL
      A0A6P3WY91
      Conserved Domains (2) summary
      cd15873
      Location:1096 → 1156
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      pfam08366
      Location:65 → 171
      LLGL; LLGL2
    Nucleotide Protein
    Heading Accession and Version

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