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    HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 [ Gallus gallus (chicken) ]

    Gene ID: 107048993, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HPS5provided by CGNC
    Official Full Name
    HPS5 biogenesis of lysosomal organelles complex 2 subunit 2provided by CGNC
    Primary source
    CGNC:80608
    See related
    Ensembl:ENSGALG00010024454
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See HPS5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (12101493..12121519, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (12070121..12090119, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 1 Neighboring gene uncharacterized LOC107053391 Neighboring gene serum amyloid A like 1 Neighboring gene serum amyloid A Neighboring gene uncharacterized LOC121111035 Neighboring gene general transcription factor IIH subunit 1 Neighboring gene lactate dehydrogenase A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in developmental pigmentation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Hermansky-Pudlak syndrome 5 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      12101493..12121519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421011.8 → XP_421011.6  Hermansky-Pudlak syndrome 5 protein isoform X1

      UniProtKB/TrEMBL
      A0A8V1A1Q1
      Related
      ENSGALP00010036442.1, ENSGALT00010059661.1
      Conserved Domains (1) summary
      sd00039
      Location:41 → 76
      7WD40; WD40 repeat [structural motif]

    2. XM_015286661.4 → XP_015142147.2  Hermansky-Pudlak syndrome 5 protein isoform X2

      Conserved Domains (1) summary
      sd00039
      Location:41 → 76
      7WD40; WD40 repeat [structural motif]

    RNA

    1. XR_005860142.2 RNA Sequence

    2. XR_005860141.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      12070121..12090119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040673942.2 → XP_040529876.1  Hermansky-Pudlak syndrome 5 protein isoform X1

      Conserved Domains (1) summary
      sd00039
      Location:41 → 76
      7WD40; WD40 repeat [structural motif]

    2. XM_040673943.2 → XP_040529877.1  Hermansky-Pudlak syndrome 5 protein isoform X2

      Conserved Domains (1) summary
      sd00039
      Location:41 → 76
      7WD40; WD40 repeat [structural motif]

    RNA

    1. XR_005850906.2 RNA Sequence

    2. XR_005850905.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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