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    TRIM7-AS1 TRIM7 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 107986496, updated on 17-Sep-2024

    Summary

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    Official Symbol
    TRIM7-AS1provided by HGNC
    Official Full Name
    TRIM7 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40764
    See related
    AllianceGenome:HGNC:40764
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in skin (RPKM 1.7), esophagus (RPKM 0.8) and 7 other tissues See more
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    Genomic context

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    See TRIM7-AS1 in Genome Data Viewer
    Location:
    5q35.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181200075..181203117)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181760111..181763151)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23782 Neighboring gene long intergenic non-protein coding RNA 1962 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16786 Neighboring gene tRNA-Thr (anticodon TGT) 6-1 Neighboring gene TRIM7 antisense RNA 2 Neighboring gene tripartite motif containing 7 Neighboring gene Sharpr-MPRA regulatory region 12726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16787 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16788 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16790 Neighboring gene tRNA-Ala (anticodon TGC) 3-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23783 Neighboring gene tRNA-Lys (anticodon CTT) 2-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      181200075..181203117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001743050.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      181760111..181763151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076223.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases