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    LOC108038675 menin [ Drosophila rhopaloa ]

    Gene ID: 108038675, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC108038675
    Gene description
    menin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila rhopaloa
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC108038675 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current ASM1815211v1 (GCF_018152115.1) Unplaced Scaffold NW_025335083.1 (2145368..2157831, complement)
    101 previous assembly Drho_2.0 (GCF_000236305.1) Unplaced Scaffold NW_016054699.1 (2567..9951)

    NW_025335083.1Genomic Context describing neighboring genes Neighboring gene dynein-1-beta heavy chain, flagellar inner arm I1 complex Neighboring gene golgin subfamily A member 5 Neighboring gene Suppressor of exocyst mutations 1 Neighboring gene Male specific transcript 27D Neighboring gene trafficking kinesin-binding protein milt Neighboring gene RNA-binding protein 39-like protein Caper

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Y-form DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    menin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila rhopaloa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815211v1

    Genomic

    1. NW_025335083.1 Reference ASM1815211v1

      Range
      2145368..2157831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044459820.1 → XP_044315755.1  menin

      UniProtKB/TrEMBL
      A0A6P4E6Y3
      Conserved Domains (1) summary
      cd14456
      Location:17 → 464
      Menin; Scaffolding protein menin encoded by the MEN1 gene
    Nucleotide Protein
    Heading Accession and Version

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