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    LOC108127804 clavesin-1 [ Drosophila bipectinata ]

    Gene ID: 108127804, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC108127804
    Gene description
    clavesin-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila bipectinata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC108127804 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM1815384v1 (GCF_018153845.1) Unplaced Scaffold NW_025063860.1 (3856998..3861819, complement)
    101 previous assembly Dbip_2.0 (GCF_000236285.1) Unplaced Scaffold NW_016089144.1 (1449058..1453907)

    NW_025063860.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108127701 Neighboring gene uncharacterized LOC108127793 Neighboring gene 1,5-anhydro-D-fructose reductase Neighboring gene kxDL motif-containing protein CG10681 Neighboring gene EARP and GARP complex-interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clavesin-1; clavesin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila bipectinata Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1815384v1

    Genomic

    1. NW_025063860.1 Reference ASM1815384v1

      Range
      3856998..3861819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017245104.2 → XP_017100593.1  clavesin-1 isoform X2

    2. XM_043214187.1 → XP_043070122.1  clavesin-2 isoform X1

      Conserved Domains (2) summary
      smart01100
      Location:90 → 136
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
      cd00170
      Location:157 → 312
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    Nucleotide Protein
    Heading Accession and Version

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