U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Tsp_05840 GDP-fucose protein O-fucosyltransferase 1 [ Trichinella spiralis ]

    Gene ID: 10910746, updated on 28-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    Tsp_05840
    Gene description
    GDP-fucose protein O-fucosyltransferase 1
    Locus tag
    Tsp_05840
    Gene type
    protein coding
    RNA name
    GDP-fucose protein O-fucosyltransferase 1
    RefSeq status
    PROVISIONAL
    Organism
    Trichinella spiralis (strain: ISS 195)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: Unknown
    Exon count:
    10

    NW_003526941.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Rab GTPase-activating protein 1 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_003526941.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptide-O-fucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein O-linked fucosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Names
    GDP-fucose protein O-fucosyltransferase 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003526941.1 Reference assembly

      Range
      5588816..5592698
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003380082.1 → XP_003380130.1  GDP-fucose protein O-fucosyltransferase 1 [Trichinella spiralis]

      See identical proteins and their annotated locations for XP_003380130.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E5S4L7
      Conserved Domains (3) summary
      cd11302
      Location:121 → 463
      O-FucT-1; GDP-fucose protein O-fucosyltransferase 1
      cd15851
      Location:32 → 97
      SNARE_Syntaxin6; SNARE motif of syntaxin 6
      pfam10250
      Location:131 → 456
      O-FucT; GDP-fucose protein O-fucosyltransferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases