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    LOC109170229 phytochrome B [ Ipomoea nil (Japanese morning glory) ]

    Gene ID: 109170229, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC109170229
    Gene description
    phytochrome B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ipomoea nil
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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    Genomic context

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    See LOC109170229 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current Asagao_1.1 (GCF_001879475.1) Unplaced Scaffold NW_017619749.1 (273435..278543, complement)

    NW_017619749.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At4g16230-like Neighboring gene RGS domain-containing serine/threonine-protein kinase A Neighboring gene ATP-citrate synthase beta chain protein 2-like Neighboring gene protein TAPETUM DETERMINANT 1-like Neighboring gene uncharacterized LOC109170232

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017619749.1 Unplaced Scaffold Reference Asagao_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphorelay sensor kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detection of visible light IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein-tetrapyrrole linkage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in red, far-red light phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phytochrome B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ipomoea nil Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asagao_1.1 Primary Assembly

    Genomic

    1. NW_017619749.1 Reference Asagao_1.1 Primary Assembly

      Range
      273435..278543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019319246.1 → XP_019174791.1  phytochrome B

    Nucleotide Protein
    Heading Accession and Version

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