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    tnfsf11 TNF superfamily member 11 [ Rhincodon typus (whale shark) ]

    Gene ID: 109937479, updated on 14-Mar-2024

    Summary

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    Gene symbol
    tnfsf11
    Gene description
    TNF superfamily member 11
    See related
    EnsemblRapid:ENSRTYG00015007967
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rhincodon typus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
    Orthologs
    human mouse all
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    Genomic context

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    See tnfsf11 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current sRhiTyp1.1 (GCF_021869965.1) 11 NC_063342.1 (75593908..75633046)
    100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018079208.1 (33500..44175)

    Chromosome 11 - NC_063342.1Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase eta-like Neighboring gene A kinase (PRKA) anchor protein 11 Neighboring gene epithelial stromal interaction 1 Neighboring gene gastrula zinc finger protein XlCGF26.1-like Neighboring gene transfer RNA glycine (anticodon UCC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF superfamily member 11; tumor necrosis factor ligand superfamily member 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422590.1 → NP_001409519.1  TNF superfamily member 11

      Status: VALIDATED

      Source sequence(s)
      JAHMAH010000011

    RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sRhiTyp1.1

    Genomic

    1. NC_063342.1 Reference sRhiTyp1.1

      Range
      75593908..75633046
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048602831.1 → XP_048458788.1  tumor necrosis factor ligand superfamily member 10 isoform X1

      Related
      ENSRTYP00015012495.1, ENSRTYT00015013648.1

    2. XM_020536060.2 → XP_020391649.2  tumor necrosis factor ligand superfamily member 10 isoform X2

      Related
      ENSRTYP00015012499.1, ENSRTYT00015013651.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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