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    LOC110430625 arginine--tRNA ligase, chloroplastic/mitochondrial-like [ Sorghum bicolor (sorghum) ]

    Gene ID: 110430625, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC110430625
    Gene description
    arginine--tRNA ligase, chloroplastic/mitochondrial-like
    Locus tag
    SORBI_3009G056200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC110430625 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (5716973..5723567)

    Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene serine/arginine-rich splicing factor RS2Z33 Neighboring gene protein argonaute 2-like Neighboring gene PHD finger protein ALFIN-LIKE 1 Neighboring gene fasciclin-like arabinogalactan protein 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables arginine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arginyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arginine--tRNA ligase, chloroplastic/mitochondrial-like; arginine--tRNA ligase, cytoplasmic-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      5716973..5723567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021448463.1 → XP_021304138.1  arginine--tRNA ligase, cytoplasmic-like isoform X1

      UniProtKB/TrEMBL
      A0A1B6P6V7, A0A921U3Y6
      Conserved Domains (1) summary
      PLN02286
      Location:77 → 656
      PLN02286; arginine-tRNA ligase

    2. XM_021448464.1 → XP_021304139.1  arginine--tRNA ligase, chloroplastic/mitochondrial-like isoform X2

      UniProtKB/TrEMBL
      A0A1B6P731, A0A921Q8K3
      Conserved Domains (1) summary
      PLN02286
      Location:25 → 604
      PLN02286; arginine-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version

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