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    LOC110650332 profilin-6 [ Hevea brasiliensis (rubber tree) ]

    Gene ID: 110650332, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC110650332
    Gene description
    profilin-6
    Locus tag
    P3X46_001487
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Hevea brasiliensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
    Also known as
    pro1; profilin; Profilin-5
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    Genomic context

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    See LOC110650332 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 1 NC_079493.1 (122287050..122289455, complement)
    100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018747833.1 (13409..15783, complement)

    Chromosome 1 - NC_079493.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110650330 Neighboring gene protein OXIDATIVE STRESS 3 Neighboring gene DNA-directed RNA polymerase III subunit rpc31 Neighboring gene mitochondrial-processing peptidase subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hev b 8, the Hevea brasiliensis latex profilin, is a cross-reactive allergen of latex, plant foods and pollen. Ganglberger E, et al. Int Arch Allergy Immunol, 2001 Jul. PMID 11490154
    2. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. Li D, et al. Sci Rep, 2016 Apr 25. PMID 27108962, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin monomer binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sequestering of actin monomers IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    profilin-6
    Names
    Pollen allergen Hev b 8.0203
    Pollen allergen Hev b 8.0204
    latex profilin Hev b 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405323.1 → NP_001392252.1  profilin-6 isoform 1

      Status: VALIDATED

      Source sequence(s)
      GDFU01044057, GEIA01086673
      UniProtKB/Swiss-Prot
      Q9LEI8
      UniProtKB/TrEMBL
      A0A6A6LI91

    2. NM_001405324.1 → NP_001392253.1  profilin-6 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AF119367, AJ243325, GDFU01044057, GDHB01033630

    RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3005281v1 Primary Assembly

    Genomic

    1. NC_079493.1 Reference ASM3005281v1 Primary Assembly

      Range
      122287050..122289455 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LEI8.1 GenPept UniProtKB/Swiss-Prot:Q9LEI8
    Q9M7M8.1 GenPept UniProtKB/Swiss-Prot:Q9M7M8

    Gene LinkOut

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    Molecular Biology Databases