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    LOC111415330 thyroid receptor-interacting protein 6 [ Onthophagus taurus ]

    Gene ID: 111415330, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC111415330
    Gene description
    thyroid receptor-interacting protein 6
    See related
    EnsemblRapid:LOC111415330
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Onthophagus taurus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Scarabaeiformia; Scarabaeidae; Scarabaeinae; Onthophagini; Onthophagus
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC111415330 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Otau_2.0 (GCF_000648695.1) Unplaced Scaffold NW_019280537.1 (120821..127760, complement)

    NW_019280537.1Genomic Context describing neighboring genes Neighboring gene translational activator of cytochrome c oxidase 1 Neighboring gene protein trapped in endoderm-1-like Neighboring gene protein FAM173B Neighboring gene transcription factor 15-like Neighboring gene endochitinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019280537 Unplaced Scaffold Reference Otau_2.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thyroid receptor-interacting protein 6

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Onthophagus taurus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otau_2.0

    Genomic

    1. NW_019280537.1 Reference Otau_2.0

      Range
      120821..127760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023046949.1 → XP_022902717.1  thyroid receptor-interacting protein 6 isoform X2

      Related
      XP_022902717.1, XM_023046949.1
      Conserved Domains (3) summary
      cd09354
      Location:422 → 481
      LIM2_LPP; The second LIM domain of lipoma preferred partner (LPP)
      cd09437
      Location:482 → 549
      LIM3_LPP; The third LIM domain of lipoma preferred partner (LPP)
      cl02475
      Location:362 → 415
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    2. XM_023046948.1 → XP_022902716.1  thyroid receptor-interacting protein 6 isoform X1

      Related
      XP_022902716.1, XM_023046948.1
      Conserved Domains (3) summary
      cd09354
      Location:428 → 487
      LIM2_LPP; The second LIM domain of lipoma preferred partner (LPP)
      cd09437
      Location:488 → 555
      LIM3_LPP; The third LIM domain of lipoma preferred partner (LPP)
      cl02475
      Location:368 → 421
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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