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    sox12 SRY-box transcription factor 12 [ Salvelinus sp. IW2-2015 ]

    Gene ID: 111970252, updated on 13-Aug-2024

    Summary

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    Gene symbol
    sox12
    Gene description
    SRY-box transcription factor 12
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salvelinus sp. IW2-2015
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
    Orthologs
    zebrafish all
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    Genomic context

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    See sox12 in Genome Data Viewer
    Location:
    chromosome: LG11
    Exon count:
    2
    Annotation release Status Assembly LG Location
    101 current ASM291031v2 (GCF_002910315.2) LG11 NC_036851.1 (33750840..33753647, complement)

    Linkage Group LG11 - NC_036851.1Genomic Context describing neighboring genes Neighboring gene tribbles homolog 2 Neighboring gene uncharacterized LOC111970251 Neighboring gene ubiquitin-like Neighboring gene purine nucleoside phosphorylase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036851.1 Chromosome LG11 Reference ASM291031v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salvelinus alpinus Annotation Release 101

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM291031v2 Primary Assembly

    Genomic

    1. NC_036851.1 Reference ASM291031v2 Primary Assembly

      Range
      33750840..33753647 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023996893.1 → XP_023852661.1  transcription factor SOX-4-like

      Conserved Domains (1) summary
      cd01388
      Location:66 → 137
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    Nucleotide Protein
    Heading Accession and Version

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