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    MST1P2 macrophage stimulating 1 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 11209, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MST1P2provided by HGNC
    Official Full Name
    macrophage stimulating 1 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:7383
    See related
    AllianceGenome:HGNC:7383
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MSPL1; MSPL2; MSPL3; MSTP1; MSTP2; MSTP3; MSPL-1; MSPL-2; MSPL-3
    Expression
    Broad expression in liver (RPKM 20.6), duodenum (RPKM 18.7) and 18 other tissues See more
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    Genomic context

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    See MST1P2 in Genome Data Viewer
    Location:
    1p36.13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16645574..16650420)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (16273050..16277896)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (16972069..16976915)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16890771-16891648 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16892527-16893404 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr1:16893405-16894282 Neighboring gene NBPF member 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16902769-16903269 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16916551-16917050 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:16918378-16918567 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16929815-16930315 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16933765-16934266 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16934267-16934766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16939903-16940860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16945048-16945716 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16945717-16946384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16946385-16947053 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16950326-16950836 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 334 Neighboring gene CROCC pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:16963058-16963558 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16964533-16965424 Neighboring gene CROCC pseudogene 2 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr1:16970879-16971669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16971670-16972459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16973171-16973790 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16974411-16975030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16975031-16975648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16976311-16976811 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16983417-16984225 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16992232-16993198 Neighboring gene FAM231A/C-like protein LOC102723383 Neighboring gene RNA, U1 small nuclear 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Long noncoding RNA MST1P2 promotes cervical cancer progression by sponging with microRNA miR-133b. Xu R, et al. Bioengineered, 2021 Dec. PMID 34034626, Free PMC Article
    2. Multiple MSP pseudogenes in a local repeat cluster on 1p36.2: An expanding genomic graveyard? van der Drift P, et al. Genomics, 1999 Nov 15. PMID 10585770

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Long noncoding RNA MST1P2 promotes cervical cancer progression by sponging with microRNA miR-133b.
      Title: Long noncoding RNA MST1P2 promotes cervical cancer progression by sponging with microRNA miR-133b.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2
    • macrophage stimulating, pseudogene 1
    • macrophage stimulating, pseudogene 2
    • macrophage stimulating, pseudogene 3

    Clone Names

    • FLJ18435

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027504.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AK293358, AL137798, AW629449, DC362930

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      16645574..16650420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791756.1 Reference GRCh38.p14 PATCHES

      Range
      1161675..1166527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      16273050..16277896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_001240.2: Suppressed sequence

      Description
      NG_001240.2: This RefSeq was permanently suppressed because it is now thought that this gene is pseudogene is transcribed. This gene is represented by NR_027504.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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