U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC112109869 endophilin-B1 [ Terrapene triunguis (Three-toed box turtle) ]

    Gene ID: 112109869, updated on 28-Nov-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC112109869
    Gene description
    endophilin-B1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Terrapene triunguis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
    Also known as
    SH3GLB1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC112109869 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664562.1 (26241338..26333111, complement)
    100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019960617.1 (14868..44394)

    NW_020664562.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate 2-O-sulfotransferase 1 Neighboring gene selenoprotein F-like Neighboring gene calcium-activated chloride channel regulator 1-like Neighboring gene calcium-activated chloride channel regulator 2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    endophilin-B1
    Names
    SH3 domain containing GRB2 like, endophilin B1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T_m_triunguis-2.0

    Genomic

    1. NW_020664562.1 Reference T_m_triunguis-2.0

      Range
      26241338..26333111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026655772.2 → XP_026511557.1  endophilin-B1

      Conserved Domains (3) summary
      cd07616
      Location:97 → 325
      BAR_Endophilin_B1; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1
      cd11945
      Location:379 → 439
      SH3_Endophilin_B1; Src homology 3 domain of Endophilin-B1
      pfam08434
      Location:21 → 97
      CLCA; Calcium-activated chloride channel N terminal
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.