U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC112562106 EF-hand calcium-binding domain-containing protein 5-like [ Pomacea canaliculata ]

    Gene ID: 112562106, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC112562106
    Gene description
    EF-hand calcium-binding domain-containing protein 5-like
    See related
    EnsemblRapid:LOC112562106
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pomacea canaliculata
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Architaenioglossa; Ampullarioidea; Ampullariidae; Pomacea
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC112562106 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    22
    Annotation release Status Assembly LG Location
    100 current ASM307304v1 (GCF_003073045.1) LG4 NC_037593.1 (4710003..4728299)

    Linkage Group LG4 - NC_037593.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 13 member 2-like Neighboring gene uncharacterized LOC112562105 Neighboring gene uncharacterized LOC112562107 Neighboring gene solute carrier family 13 member 5-like Neighboring gene solute carrier family 13 member 5-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037593.1 Chromosome LG4 Reference ASM307304v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: EF-hand calcium-binding domain-containing protein 5-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Pomacea canaliculata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM307304v1 Primary Assembly

    Genomic

    1. NC_037593.1 Reference ASM307304v1 Primary Assembly

      Range
      4710003..4728299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025235120.1 → XP_025090905.1  LOW QUALITY PROTEIN: EF-hand calcium-binding domain-containing protein 5-like

      UniProtKB/TrEMBL
      A0A2T7PDF7
      Related
      XP_025090905.1, XM_025235120.1
      Conserved Domains (5) summary
      smart00065
      Location:770 → 862
      GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
      pfam05186
      Location:99 → 154
      Dpy-30; Dpy-30 motif
      cd15898
      Location:588 → 616
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl26761
      Location:378 → 531
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      cl28895
      Location:588 → 650
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases