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    LOC113041146 transcription factor GATA-5-like [ Carassius auratus (goldfish) ]

    Gene ID: 113041146, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC113041146
    Gene description
    transcription factor GATA-5-like
    See related
    Ensembl:ENSCARG00000022548
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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    Genomic context

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    See LOC113041146 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM336829v1 (GCF_003368295.1) 23 NC_039265.1 (7452607..7459799, complement)

    Chromosome 23 - NC_039265.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily protein member 4 Neighboring gene RBBP8 N-terminal-like protein Neighboring gene HCK proto-oncogene, Src family tyrosine kinase Neighboring gene uncharacterized LOC113041147 Neighboring gene solute carrier organic anion transporter family, member 4A1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039265.1 Chromosome 23 Reference ASM336829v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GATA-5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM336829v1 Primary Assembly

    Genomic

    1. NC_039265.1 Reference ASM336829v1 Primary Assembly

      Range
      7452607..7459799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026199512.1 → XP_026055297.1  transcription factor GATA-5-like

      UniProtKB/TrEMBL
      A0A6P6JBV2
      Related
      ENSCARP00000052148.1, ENSCART00000054473.1
    Nucleotide Protein Strain
    Heading Accession and Version

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