U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC113043597 tumor susceptibility gene 101 protein-like [ Carassius auratus (goldfish) ]

    Gene ID: 113043597, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC113043597
    Gene description
    tumor susceptibility gene 101 protein-like
    See related
    Ensembl:ENSCARG00000013931
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC113043597 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM336829v1 (GCF_003368295.1) 25 NC_039267.1 (19131967..19143604, complement)

    Chromosome 25 - NC_039267.1Genomic Context describing neighboring genes Neighboring gene BR serine/threonine kinase 2a Neighboring gene L-lactate dehydrogenase A chain Neighboring gene GTPase HRas-like Neighboring gene uncharacterized LOC113043602

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_039267.1 Chromosome 25 Reference ASM336829v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosome to lysosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tumor susceptibility gene 101 protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM336829v1 Primary Assembly

    Genomic

    1. NC_039267.1 Reference ASM336829v1 Primary Assembly

      Range
      19131967..19143604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026203088.1 → XP_026058873.1  tumor susceptibility gene 101 protein-like

      UniProtKB/TrEMBL
      A0A6P6JGT9
      Related
      ENSCARP00000031571.1, ENSCART00000033067.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases