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    PDE1C phosphodiesterase 1C [ Athene cunicularia (burrowing owl) ]

    Gene ID: 113477585, updated on 3-Aug-2024

    Summary

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    Gene symbol
    PDE1C
    Gene description
    phosphodiesterase 1C
    See related
    Ensembl:ENSACUG00000005938
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Athene cunicularia
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Strigidae; Athene
    Orthologs
    human mouse all
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    Genomic context

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    See PDE1C in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current athCun1 (GCF_003259725.1) 2 Unlocalized Scaffold NW_020799096.1 (7299432..7618254)

    NW_020799096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113477593 Neighboring gene uncharacterized LOC113477592 Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene ITPR interacting domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020799096 Chromosome 2 Unlocalized Scaffold Reference athCun1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Athene cunicularia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference athCun1

    Genomic

    1. NW_020799096.1 Reference athCun1

      Range
      7299432..7618254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026844005.1 → XP_026699806.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X6

    2. XM_026844000.1 → XP_026699801.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

      UniProtKB/TrEMBL
      A0A663MAJ7

    3. XM_026844001.1 → XP_026699802.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X2

      UniProtKB/TrEMBL
      A0A663MA93, A0A663MAJ7
      Related
      ENSACUP00000008759.1, ENSACUT00000009342.1

    4. XM_026844004.1 → XP_026699805.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X5

      UniProtKB/TrEMBL
      A0A663MAJ7
      Conserved Domains (3) summary
      pfam00233
      Location:287 → 505
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
      pfam08499
      Location:146 → 202
      PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
      cl26464
      Location:519 → 669
      Atrophin-1; Atrophin-1 family

    5. XM_026844002.1 → XP_026699803.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

      UniProtKB/TrEMBL
      A0A663MAJ7
      Related
      ENSACUP00000008762.1, ENSACUT00000009345.1
      Conserved Domains (3) summary
      pfam00233
      Location:227 → 445
      PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
      pfam08499
      Location:86 → 142
      PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
      cl26464
      Location:459 → 609
      Atrophin-1; Atrophin-1 family

    6. XM_026844003.1 → XP_026699804.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

      UniProtKB/TrEMBL
      A0A663MAJ7
    Nucleotide Protein
    Heading Accession and Version

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