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    LOC113493491 aromatic-L-amino-acid decarboxylase [ Trichoplusia ni (cabbage looper) ]

    Gene ID: 113493491, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC113493491
    Gene description
    aromatic-L-amino-acid decarboxylase
    See related
    EnsemblRapid:ENSNTCG00000016342
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichoplusia ni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
    Also known as
    DDC
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    Genomic context

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    See LOC113493491 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current tn1 (GCF_003590095.1) 4 NC_039481.1 (19484481..19496010)

    Chromosome 4 - NC_039481.1Genomic Context describing neighboring genes Neighboring gene probable palmitoyltransferase ZDHHC24 Neighboring gene monolysocardiolipin acyltransferase Mtpalpha Neighboring gene peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like Neighboring gene kelch-like protein 40a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039481.1 Chromosome 4 Reference tn1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome responses of the host Trichoplusia ni to infection by the baculovirus Autographa californica multiple nucleopolyhedrovirus. Chen YR, et al. J Virol, 2014 Dec. PMID 25231311, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aromatic-L-amino-acid decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in catecholamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in serotonin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aromatic-L-amino-acid decarboxylase
    Names
    dopa decarboxylase
    putative dopa decarboxylase protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference tn1

    Genomic

    1. NC_039481.1 Reference tn1

      Range
      19484481..19496010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026871491.1 → XP_026727292.1  aromatic-L-amino-acid decarboxylase isoform X1

      UniProtKB/TrEMBL
      A0A7E5VG72, B3TEB7
      Related
      ENSNTCP00000021234.1, ENSNTCT00000026200.1
      Conserved Domains (1) summary
      pfam00282
      Location:47 → 424
      Pyridoxal_deC; Pyridoxal-dependent decarboxylase conserved domain

    2. XM_026871492.1 → XP_026727293.1  aromatic-L-amino-acid decarboxylase isoform X2

      UniProtKB/TrEMBL
      A0A7E5VG61, B3TEB7
      Related
      ENSNTCP00000021241.1, ENSNTCT00000026208.1

    3. XM_026871494.1 → XP_026727295.1  aromatic-L-amino-acid decarboxylase isoform X2

      UniProtKB/TrEMBL
      A0A7E5VG61, B3TEB7
      Related
      ENSNTCP00000021225.1, ENSNTCT00000026190.1
      Conserved Domains (1) summary
      pfam00282
      Location:35 → 412
      Pyridoxal_deC; Pyridoxal-dependent decarboxylase conserved domain
    Nucleotide Protein
    Heading Accession and Version

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