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    dhx9 DEAH (Asp-Glu-Ala-His) box helicase 9 [ Pangasianodon hypophthalmus (striped catfish) ]

    Gene ID: 113540379, updated on 15-Mar-2024

    Summary

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    Gene symbol
    dhx9
    Gene description
    DEAH (Asp-Glu-Ala-His) box helicase 9
    Locus tag
    PHYPO_G00199720
    See related
    EnsemblRapid:ENSPHYG00025002024
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pangasianodon hypophthalmus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
    Orthologs
    human zebrafish all
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    Genomic context

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    See dhx9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 4 NC_069713.1 (32643829..32657534)

    Chromosome 4 - NC_069713.1Genomic Context describing neighboring genes Neighboring gene RING finger protein 212B Neighboring gene zona pellucida glycoprotein 3f, tandem duplicate 2 Neighboring gene laminin, gamma 1 Neighboring gene laminin, gamma 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_069713.1 Chromosome 4 Reference fPanHyp1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables 3'-5' DNA/RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase A
    Names
    DExH-box helicase 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPanHyp1.pri

    Genomic

    1. NC_069713.1 Reference fPanHyp1.pri

      Range
      32643829..32657534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026936824.3 → XP_026792625.1  ATP-dependent RNA helicase A isoform X1

      UniProtKB/TrEMBL
      A0A5N5PKX8
      Related
      ENSPHYP00025003652.1, ENSPHYT00025004350.1
      Conserved Domains (2) summary
      smart00358
      Location:5 → 69
      DSRM; Double-stranded RNA binding motif
      COG1643
      Location:387 → 1056
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

    2. XM_026936825.3 → XP_026792626.1  ATP-dependent RNA helicase A isoform X2

      Related
      ENSPHYP00025003645.1, ENSPHYT00025004343.1
      Conserved Domains (1) summary
      COG1643
      Location:166 → 835
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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