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    Agmat agmatinase (putative) [ Marmota flaviventris (yellow-bellied marmot) ]

    Gene ID: 114105466, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Agmat
    Gene description
    agmatinase (putative)
    See related
    EnsemblRapid:ENSMFVG00000010555
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Marmota flaviventris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
    Orthologs
    human mouse all
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    Genomic context

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    See Agmat in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current GSC_YBM_2.0 (GCF_003676075.2) Unplaced Scaffold NW_023144788.1 (1561626..1571119, complement)
    100 previous assembly ASM367607v1 (GCF_003676075.1) Unplaced Scaffold NW_020963264.1 (1561710..1571203, complement)

    NW_023144788.1Genomic Context describing neighboring genes Neighboring gene chymotrypsin-like elastase family member 2A Neighboring gene caspase 9 Neighboring gene DnaJ heat shock protein family (Hsp40) member C16 Neighboring gene protein DDI1 homolog 2 Neighboring gene pleckstrin homology and RUN domain containing M2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables agmatinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in putrescine biosynthetic process from arginine, using agmatinase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agmatinase, mitochondrial
    Names
    agmatinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Marmota flaviventris Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_YBM_2.0 Primary Assembly

    Genomic

    1. NW_023144788.1 Reference GSC_YBM_2.0 Primary Assembly

      Range
      1561626..1571119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027951965.1 → XP_027807766.1  agmatinase, mitochondrial

      Related
      ENSMFVP00000017167.1, ENSMFVT00000019089.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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