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    LOC114313244 respiratory burst oxidase homolog protein C-like [ Camellia sinensis ]

    Gene ID: 114313244, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC114313244
    Gene description
    respiratory burst oxidase homolog protein C-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camellia sinensis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
    Also known as
    RBOHA
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    Genomic context

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    See LOC114313244 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021024984.1 (1543592..1551428)

    NW_021024984.1Genomic Context describing neighboring genes Neighboring gene chaperone protein ClpD, chloroplastic-like Neighboring gene uncharacterized LOC114313217 Neighboring gene inositol polyphosphate multikinase beta-like Neighboring gene inositol polyphosphate multikinase beta-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_021024984 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: respiratory burst oxidase homolog protein C-like
    Names
    NADPH oxidase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AHAU_CSS_1 Primary Assembly

    Genomic

    1. NW_021024984.1 Reference AHAU_CSS_1 Primary Assembly

      Range
      1543592..1551428
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028259609.1 → XP_028115410.1  LOW QUALITY PROTEIN: respiratory burst oxidase homolog protein C-like

      UniProtKB/TrEMBL
      A0A4S4D9P8
      Conserved Domains (6) summary
      cd06186
      Location:612 → 835
      NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
      cd00051
      Location:231 → 277
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam01794
      Location:418 → 565
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08030
      Location:732 → 905
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam08414
      Location:153 → 249
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:249 → 311
      EF-hand_7; EF-hand domain pair
    Nucleotide Protein
    Heading Accession and Version

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