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    GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Phyllostomus discolor (pale spear-nosed bat) ]

    Gene ID: 114507095, updated on 30-Mar-2024

    Summary

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    Gene symbol
    GPCPD1
    Gene description
    glycerophosphocholine phosphodiesterase 1
    See related
    EnsemblRapid:ENSPDIG00005021862
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phyllostomus discolor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Phyllostominae; Phyllostomus
    Orthologs
    human mouse all
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    Genomic context

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    See GPCPD1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    101 current mPhyDis1.pri.v3 (GCF_004126475.2) 9 NC_040911.2 (79672836..79725574)
    100 previous assembly mPhyDis1_v1.p (GCF_004126475.1) 10 NC_040912.1 (79672831..79725616)

    Chromosome 9 - NC_040911.2Genomic Context describing neighboring genes Neighboring gene ADP-sugar pyrophosphatase-like Neighboring gene small nucleolar RNA SNORA26 Neighboring gene translation initiation factor eIF-2B subunit alpha-like Neighboring gene mitochondrial import inner membrane translocase subunit TIM16-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerophosphocholine phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerophosphocholine phosphodiesterase GPCPD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phyllostomus discolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mPhyDis1.pri.v3

    Genomic

    1. NC_040911.2 Reference mPhyDis1.pri.v3

      Range
      79672836..79725574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028525114.2 → XP_028380915.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      A0A6J2MSJ3, A0A833Z0W4
      Related
      ENSPDIP00005030852.1, ENSPDIT00005035707.2
      Conserved Domains (2) summary
      cd05814
      Location:4 → 126
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:318 → 610
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    2. XM_036009588.1 → XP_035865481.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

      UniProtKB/TrEMBL
      A0A7E6CEW5, A0A833Z0W4
      Conserved Domains (2) summary
      cd05814
      Location:4 → 126
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:318 → 584
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    3. XM_036009586.1 → XP_035865479.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      A0A6J2MSJ3, A0A833Z0W4
      Conserved Domains (2) summary
      cd05814
      Location:4 → 126
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:318 → 610
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    4. XM_036009587.1 → XP_035865480.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      A0A6J2MSJ3, A0A833Z0W4
      Conserved Domains (2) summary
      cd05814
      Location:4 → 126
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:318 → 610
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    RNA

    1. XR_004899347.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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