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    TRAPPC2L trafficking protein particle complex subunit 2L [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115095225, updated on 17-Mar-2024

    Summary

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    Gene symbol
    TRAPPC2L
    Gene description
    trafficking protein particle complex subunit 2L
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
    Orthologs
    human mouse all
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    Genomic context

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    See TRAPPC2L in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 7 NC_042621.1 (86389385..86412950, complement)

    Chromosome 7 - NC_042621.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115095221 Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 3 Neighboring gene galactosamine (N-acetyl)-6-sulfatase Neighboring gene adenine phosphoribosyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042621.1 Chromosome 7 Reference aRhiBiv1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRAPP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 2-like protein
    Names
    trafficking protein particle complex 2 like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042621.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      86389385..86412950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029608621.1 → XP_029464481.1  trafficking protein particle complex subunit 2-like protein

      Conserved Domains (1) summary
      cd14854
      Location:8 → 140
      TRAPPC2L; Trafficking protein particle complex subunit 2-like
    Nucleotide Protein
    Heading Accession and Version

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