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    SH3PXD2A SH3 and PX domains 2A [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115095945, updated on 17-Mar-2024

    Summary

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    Gene symbol
    SH3PXD2A
    Gene description
    SH3 and PX domains 2A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
    Orthologs
    human mouse all
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    Genomic context

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    See SH3PXD2A in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 7 NC_042621.1 (277772280..278343693, complement)

    Chromosome 7 - NC_042621.1Genomic Context describing neighboring genes Neighboring gene calcium homeostasis modulator protein 3-like Neighboring gene neuralized E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC115095944 Neighboring gene STN1 subunit of CST complex Neighboring gene STE20 like kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042621.1 Chromosome 7 Reference aRhiBiv1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide-generating NADPH oxidase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in superoxide anion generation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SH3 and PX domain-containing protein 2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042621.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      277772280..278343693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029610305.1 → XP_029466165.1  SH3 and PX domain-containing protein 2A isoform X1

    2. XM_029610306.1 → XP_029466166.1  SH3 and PX domain-containing protein 2A isoform X2

    3. XM_029610304.1 → XP_029466164.1  SH3 and PX domain-containing protein 2A isoform X1

      Conserved Domains (7) summary
      cd06888
      Location:6 → 124
      PX_FISH; The phosphoinositide binding Phox Homology domain of Five SH protein
      cd12019
      Location:828 → 880
      SH3_Tks5_4; Fourth Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains
      cd12020
      Location:1062 → 1118
      SH3_Tks5_5; Fifth (C-terminal) Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains
      cd12074
      Location:170 → 222
      SH3_Tks5_1; First Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains
      cd12077
      Location:269 → 322
      SH3_Tks5_2; Second Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains
      cd12079
      Location:450 → 503
      SH3_Tks5_3; Third Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains
      TIGR04211
      Location:844 → 928
      SH3_and_anchor; SH3 domain protein

    4. XM_029610307.1 → XP_029466167.1  SH3 and PX domain-containing protein 2A isoform X3

    5. XM_029610309.1 → XP_029466169.1  SH3 and PX domain-containing protein 2A isoform X4

    Nucleotide Protein
    Heading Accession and Version

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