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    PLXNB2 plexin B2 [ Rhinatrema bivittatum (two-lined caecilian) ]

    Gene ID: 115099650, updated on 17-Mar-2024

    Summary

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    Gene symbol
    PLXNB2
    Gene description
    plexin B2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhinatrema bivittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
    Orthologs
    human mouse all
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    Genomic context

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    See PLXNB2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    100 current aRhiBiv1.1 (GCF_901001135.1) 9 NC_042623.1 (81385004..81888246, complement)

    Chromosome 9 - NC_042623.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 12 Neighboring gene mitogen-activated protein kinase 11 Neighboring gene zinc finger protein 800 Neighboring gene glutamate metabotropic receptor 8 Neighboring gene uncharacterized LOC115098995

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042623.1 Chromosome 9 Reference aRhiBiv1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-B2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aRhiBiv1.1 Primary Assembly

    Genomic

    1. NC_042623.1 Reference aRhiBiv1.1 Primary Assembly

      Range
      81385004..81888246 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029617384.1 → XP_029473244.1  plexin-B2 isoform X1

      Conserved Domains (7) summary
      smart00429
      Location:923 → 1008
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:493 → 538
      PSI; Plexin repeat
      pfam08337
      Location:1297 → 1828
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:551 → 639
      TIG_plexin; TIG domain
      pfam18020
      Location:701 → 784
      TIG_2; TIG domain found in plexin
      cl15674
      Location:832 → 923
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:42 → 492
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_029617385.1 → XP_029473245.1  plexin-B2 isoform X2

    3. XM_029617386.1 → XP_029473246.1  plexin-B2 isoform X2

      Conserved Domains (7) summary
      smart00429
      Location:912 → 997
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:482 → 527
      PSI; Plexin repeat
      pfam08337
      Location:1286 → 1817
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:540 → 628
      TIG_plexin; TIG domain
      pfam18020
      Location:690 → 773
      TIG_2; TIG domain found in plexin
      cl15674
      Location:821 → 912
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:31 → 481
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    4. XM_029617388.1 → XP_029473248.1  plexin-B2 isoform X2

    5. XM_029617390.1 → XP_029473250.1  plexin-B2 isoform X2

    6. XM_029617389.1 → XP_029473249.1  plexin-B2 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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