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    LOC115195008 apoptotic chromatin condensation inducer in the nucleus-like [ Salmo trutta (river trout) ]

    Gene ID: 115195008, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115195008
    Gene description
    apoptotic chromatin condensation inducer in the nucleus-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC115195008 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 5 NC_042961.1 (62743599..62781444)

    Chromosome 5 - NC_042961.1Genomic Context describing neighboring genes Neighboring gene autotransporter adhesin UpaG-like Neighboring gene uncharacterized LOC115194749 Neighboring gene coiled-coil domain containing 171 Neighboring gene uncharacterized LOC115194750 Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene complement factor I

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042961.1 Chromosome 5 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apoptotic chromatin condensation inducer in the nucleus-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042961.1 Reference fSalTru1.1 Primary Assembly

      Range
      62743599..62781444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029754909.1 → XP_029610769.1  apoptotic chromatin condensation inducer in the nucleus-like

      Conserved Domains (5) summary
      cd05834
      Location:7 → 85
      HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
      PRK13808
      Location:765 → 906
      PRK13808; adenylate kinase; Provisional
      PTZ00121
      Location:858 → 1096
      PTZ00121; MAEBL; Provisional
      TIGR00927
      Location:247 → 497
      2A1904; K+-dependent Na+/Ca+ exchanger
      pfam11467
      Location:1126 → 1218
      LEDGF; Lens epithelium-derived growth factor (LEDGF)
    Nucleotide Protein
    Heading Accession and Version

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