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    LOC115542582 plexin-B2-like [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115542582, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC115542582
    Gene description
    plexin-B2-like
    See related
    Ensembl:ENSGMOG00000022577
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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    Genomic context

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    See LOC115542582 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 4 NC_044051.1 (3486340..3624851)

    Chromosome 4 - NC_044051.1Genomic Context describing neighboring genes Neighboring gene potassium inwardly rectifying channel subfamily J member 8 Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 9 Neighboring gene probable helicase with zinc finger domain Neighboring gene E3 ubiquitin-protein ligase TRIM47-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044051.1 Chromosome 4 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-B2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044051.1 Reference gadMor3.0 Primary Assembly

      Range
      3486340..3624851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030354881.1 → XP_030210741.1  plexin-B2-like

      UniProtKB/TrEMBL
      A0A8C5AAV1, A0A8C5BVZ8
      Conserved Domains (6) summary
      smart00429
      Location:942 → 1032
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:502 → 552
      PSI; Plexin repeat
      pfam08337
      Location:1315 → 1841
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:559 → 646
      TIG_plexin; TIG domain
      cl15674
      Location:842 → 904
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:47 → 500
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_030354882.1 → XP_030210742.1  plexin-B2-like

      UniProtKB/TrEMBL
      A0A8C5AAV1, A0A8C5BVZ8
      Related
      ENSGMOP00000028805.1, ENSGMOT00000049245.1
      Conserved Domains (6) summary
      smart00429
      Location:942 → 1032
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:502 → 552
      PSI; Plexin repeat
      pfam08337
      Location:1315 → 1841
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:559 → 646
      TIG_plexin; TIG domain
      cl15674
      Location:842 → 904
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:47 → 500
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    Nucleotide Protein
    Heading Accession and Version

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