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    AMFR autocrine motility factor receptor [ Strigops habroptila (Kakapo) ]

    Gene ID: 115619861, updated on 3-Aug-2024

    Summary

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    Gene symbol
    AMFR
    Gene description
    autocrine motility factor receptor
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
    Orthologs
    human mouse all
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    Genomic context

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    See AMFR in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) Z NC_044302.2 (20194122..20232515, complement)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) Z NC_044302.1 (20194122..20232515, complement)

    Chromosome Z - NC_044302.2Genomic Context describing neighboring genes Neighboring gene core-binding factor subunit beta Neighboring gene G protein subunit alpha o1 Neighboring gene nudix hydrolase 21 Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 1 Neighboring gene Bardet-Biedl syndrome 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase AMFR

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NC_044302.2 Reference bStrHab1.2.pri

      Range
      20194122..20232515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030512777.1 → XP_030368637.1  E3 ubiquitin-protein ligase AMFR isoform X1

      UniProtKB/TrEMBL
      A0A672TYQ8
      Conserved Domains (4) summary
      COG5243
      Location:75 → 371
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd14421
      Location:447 → 487
      CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
      cd16455
      Location:328 → 371
      RING-H2_AMFR; RING finger, H2 subclass, found in autocrine motility factor receptor (AMFR) and similar proteins
      pfam18442
      Location:564 → 589
      G2BR; E3 gp78 Ube2g2-binding region (G2BR)

    2. XM_030512780.1 → XP_030368640.1  E3 ubiquitin-protein ligase AMFR isoform X4

      Conserved Domains (3) summary
      COG5243
      Location:75 → 371
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd14421
      Location:447 → 487
      CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
      cd16455
      Location:328 → 371
      RING-H2_AMFR; RING finger, H2 subclass, found in autocrine motility factor receptor (AMFR) and similar proteins

    3. XM_030512779.1 → XP_030368639.1  E3 ubiquitin-protein ligase AMFR isoform X3

      Conserved Domains (4) summary
      COG5243
      Location:147 → 320
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd14421
      Location:396 → 436
      CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
      cd16455
      Location:277 → 320
      RING-H2_AMFR; RING finger, H2 subclass, found in autocrine motility factor receptor (AMFR) and similar proteins
      pfam18442
      Location:513 → 538
      G2BR; E3 gp78 Ube2g2-binding region (G2BR)

    4. XM_030512778.1 → XP_030368638.1  E3 ubiquitin-protein ligase AMFR isoform X2

      UniProtKB/TrEMBL
      A0A672TVX6
      Conserved Domains (3) summary
      COG5243
      Location:75 → 371
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cd14421
      Location:447 → 487
      CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
      cd16455
      Location:328 → 371
      RING-H2_AMFR; RING finger, H2 subclass, found in autocrine motility factor receptor (AMFR) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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