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    LOC115830379 recombining binding protein suppressor of hairless [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 115830379, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC115830379
    Gene description
    recombining binding protein suppressor of hairless
    See related
    EnsemblRapid:ENSNLEG00000016895
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
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    Genomic context

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    See LOC115830379 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) 20 NC_044400.1 (58864788..58979913, complement)

    Chromosome 20 - NC_044400.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 19 Neighboring gene small nucleolar RNA SNORD74 Neighboring gene cholecystokinin A receptor Neighboring gene 60S ribosomal protein L36a-like Neighboring gene uncharacterized LOC100594552 Neighboring gene zinc finger protein 248 pseudogene Neighboring gene 40S ribosomal protein S24 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044400.1 Chromosome 20 Reference Asia_NLE_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MAML1-RBP-Jkappa- ICN1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    recombining binding protein suppressor of hairless

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044400.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      58864788..58979913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030800817.1 → XP_030656677.1  recombining binding protein suppressor of hairless isoform X1

      UniProtKB/TrEMBL
      A0A2I3GY03
      Related
      ENSNLEP00000036244.2, ENSNLET00000048020.2
      Conserved Domains (3) summary
      cd01176
      Location:337 → 433
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:193 → 315
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:35 → 160
      LAG1-DNAbind; LAG1, DNA binding

    2. XM_030800818.1 → XP_030656678.1  recombining binding protein suppressor of hairless isoform X2

      UniProtKB/TrEMBL
      A0A2I3GY03
      Conserved Domains (3) summary
      cd01176
      Location:336 → 432
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:192 → 314
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:34 → 159
      LAG1-DNAbind; LAG1, DNA binding

    3. XM_030800822.1 → XP_030656682.1  recombining binding protein suppressor of hairless isoform X3

      UniProtKB/TrEMBL
      A0A2I3GY03
      Conserved Domains (3) summary
      cd01176
      Location:315 → 411
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:171 → 293
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:13 → 138
      LAG1-DNAbind; LAG1, DNA binding

    4. XM_030800819.1 → XP_030656679.1  recombining binding protein suppressor of hairless isoform X2

      UniProtKB/TrEMBL
      A0A2I3GY03
      Related
      ENSNLEP00000029935.2, ENSNLET00000034193.2
      Conserved Domains (3) summary
      cd01176
      Location:336 → 432
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:192 → 314
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:34 → 159
      LAG1-DNAbind; LAG1, DNA binding

    5. XM_030800821.1 → XP_030656681.1  recombining binding protein suppressor of hairless isoform X3

      UniProtKB/TrEMBL
      A0A2I3GY03
      Conserved Domains (3) summary
      cd01176
      Location:315 → 411
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:171 → 293
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:13 → 138
      LAG1-DNAbind; LAG1, DNA binding

    6. XM_030800820.1 → XP_030656680.1  recombining binding protein suppressor of hairless isoform X2

      UniProtKB/TrEMBL
      A0A2I3GY03
      Conserved Domains (3) summary
      cd01176
      Location:336 → 432
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:192 → 314
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:34 → 159
      LAG1-DNAbind; LAG1, DNA binding

    7. XM_030800823.1 → XP_030656683.1  recombining binding protein suppressor of hairless isoform X3

      UniProtKB/TrEMBL
      A0A2I3GY03
      Conserved Domains (3) summary
      cd01176
      Location:315 → 411
      IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
      pfam09270
      Location:171 → 293
      BTD; Beta-trefoil DNA-binding domain
      pfam09271
      Location:13 → 138
      LAG1-DNAbind; LAG1, DNA binding
    Nucleotide Protein
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