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    LOC116435291 RNA binding motif protein 12B-like [ Xenopus laevis (African clawed frog) ]

    Gene ID: 116435291, updated on 12-May-2024

    Summary

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    Gene symbol
    LOC116435291
    Gene description
    RNA binding motif protein 12B-like
    Locus tag
    XELAEV_18032193mg
    See related
    EnsemblRapid:ENSXLAG00005032219
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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    Genomic context

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    See LOC116435291 in Genome Data Viewer
    Location:
    chromosome: 6L
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (137640338..137652811)

    Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 12B-A-like Neighboring gene RNA binding motif protein 12B gene 1 L homeolog Neighboring gene RNA-binding protein 12B Neighboring gene pyruvate dehydrogenase [acetyl-transferring]-phosphatase 1, mitochondrial Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 1 L homeolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_054381.1 Chromosome 6L Reference Xenopus_laevis_v10.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RNA binding motif protein 12B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001377473.1 → NP_001364402.1  RNA binding motif protein 12B-like

      Status: VALIDATED

      Source sequence(s)
      JAGEVR010000049
      UniProtKB/TrEMBL
      A0A8J0QG11
      Conserved Domains (4) summary
      COG0724
      Location:112 → 316
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12513
      Location:318 → 398
      RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
      cd12744
      Location:30 → 108
      RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
      cl17169
      Location:432 → 507
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      137640338..137652811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041565226.1 → XP_041421160.1  RNA binding motif protein 12B-like isoform X2

      UniProtKB/TrEMBL
      A0A1L8FZH5, A0A974CP25
      Related
      ENSXLAP00005096614.1, ENSXLAT00005098392.1
      Conserved Domains (4) summary
      COG0724
      Location:84 → 288
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12513
      Location:290 → 370
      RRM3_RBM12B; RNA recognition motif 3 (RRM3) found in RNA-binding protein 12B (RBM12B) and similar proteins
      cd12744
      Location:2 → 80
      RRM1_RBM12B; RNA recognition motif 1 (RRM1) found in RNA-binding protein 12B (RBM12B) and similar proteins
      cl17169
      Location:404 → 479
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_041565225.1 → XP_041421159.1  RNA binding motif protein 12B-like isoform X1

      UniProtKB/TrEMBL
      A0A8J1KY19
      Conserved Domains (3) summary
      smart00360
      Location:619 → 686
      RRM; RNA recognition motif
      COG0724
      Location:280 → 462
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:36 → 123
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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