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    TCF19 transcription factor 19 [ Thamnophis elegans (Western terrestrial garter snake) ]

    Gene ID: 116504304, updated on 18-Mar-2024

    Summary

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    Gene symbol
    TCF19
    Gene description
    transcription factor 19
    See related
    EnsemblRapid:ENSTELG00000000371
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thamnophis elegans
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
    Orthologs
    human mouse all
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    Genomic context

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    See TCF19 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current rThaEle1.pri (GCF_009769535.1) 2 NC_045542.1 (150350442..150358440)

    Chromosome 2 - NC_045542.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene coiled-coil alpha-helical rod protein 1-like Neighboring gene POU class 5 homeobox 1 Neighboring gene UPF0711 protein C18orf21 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045542.1 Chromosome 2 Reference rThaEle1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thamnophis elegans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rThaEle1.pri

    Genomic

    1. NC_045542.1 Reference rThaEle1.pri

      Range
      150350442..150358440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032211239.1 → XP_032067130.1  transcription factor 19

      Related
      ENSTELP00000000474.1, ENSTELT00000000489.1
      Conserved Domains (2) summary
      cd00060
      Location:34 → 120
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cl22851
      Location:331 → 376
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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