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    LOC116842709 DDB1- and CUL4-associated factor 11-like [ Odontomachus brunneus ]

    Gene ID: 116842709, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC116842709
    Gene description
    DDB1- and CUL4-associated factor 11-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Odontomachus brunneus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Odontomachus
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    Genomic context

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    See LOC116842709 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current Obru_v1 (GCF_010583005.1) Unplaced Scaffold NW_022639476.1 (351199..385265, complement)

    NW_022639476.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 2 Neighboring gene DDB1- and CUL4-associated factor 11-like Neighboring gene C45 family peptidase tan Neighboring gene SCY1-like protein bma Neighboring gene uncharacterized LOC116842713 Neighboring gene septin 7-like protein pnut

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022639476 Unplaced Scaffold Reference Obru_v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DDB1- and CUL4-associated factor 11-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Odontomachus brunneus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Obru_v1

    Genomic

    1. NW_022639476.1 Reference Obru_v1

      Range
      351199..385265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032812294.1 → XP_032668185.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_032812288.1 → XP_032668179.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_032812295.1 → XP_032668186.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_032812293.1 → XP_032668184.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_032812291.1 → XP_032668182.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. XM_032812292.1 → XP_032668183.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. XM_032812287.1 → XP_032668178.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    8. XM_032812290.1 → XP_032668181.1  DDB1- and CUL4-associated factor 11-like isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:240 → 277
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:139 → 484
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    9. XM_032812296.1 → XP_032668187.1  DDB1- and CUL4-associated factor 11-like isoform X2

      Conserved Domains (2) summary
      sd00039
      Location:239 → 276
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:138 → 483
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    10. XM_032812297.1 → XP_032668188.1  DDB1- and CUL4-associated factor 11-like isoform X3

      Conserved Domains (2) summary
      sd00039
      Location:221 → 258
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:120 → 465
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    11. XM_032812298.1 → XP_032668189.1  DDB1- and CUL4-associated factor 11-like isoform X4

      Conserved Domains (2) summary
      sd00039
      Location:220 → 257
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:119 → 464
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    12. XM_032812300.1 → XP_032668191.1  DDB1- and CUL4-associated factor 11-like isoform X6

      Conserved Domains (2) summary
      sd00039
      Location:131 → 168
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:30 → 375
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    13. XM_032812301.1 → XP_032668192.1  DDB1- and CUL4-associated factor 11-like isoform X6

      Conserved Domains (2) summary
      sd00039
      Location:131 → 168
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:30 → 375
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    14. XM_032812299.1 → XP_032668190.1  DDB1- and CUL4-associated factor 11-like isoform X5

      Conserved Domains (2) summary
      sd00039
      Location:203 → 240
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:102 → 447
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_004377762.1 RNA Sequence

    2. XR_004377761.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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