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    LOC116922913 carboxypeptidase B [ Daphnia magna ]

    Gene ID: 116922913, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC116922913
    Gene description
    carboxypeptidase B
    See related
    EnsemblRapid:LOC116922913
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Daphnia magna
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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    Genomic context

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    See LOC116922913 in Genome Data Viewer
    Location:
    chromosome: LG5
    Exon count:
    9
    Annotation release Status Assembly LG Location
    101 current ASM2063170v1.1 (GCF_020631705.1) LG5 NC_059186.1 (7764961..7767315)
    100 previous assembly ASM399081v1 (GCF_003990815.1) LG5 NC_046178.1 (5284367..5287287)

    Linkage Group LG5 - NC_059186.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116922788 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene uncharacterized LOC116923013 Neighboring gene uncharacterized LOC123472652 Neighboring gene uncharacterized LOC116923015

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carboxypeptidase B
    Names
    Carboxypeptidase B2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2063170v1.1 Primary Assembly

    Genomic

    1. NC_059186.1 Reference ASM2063170v1.1 Primary Assembly

      Range
      7764961..7767315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045174600.1 → XP_045030535.1  carboxypeptidase B isoform X1

      UniProtKB/TrEMBL
      A0A0P5AHU6
      Related
      XP_045030535.1, XM_045174600.1

    2. XM_045174601.1 → XP_045030536.1  carboxypeptidase B isoform X2

      UniProtKB/TrEMBL
      A0A0P5AHU6
      Related
      XP_045030536.1, XM_045174601.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases