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    THUMPD3 THUMP domain containing 3 [ Petromyzon marinus (sea lamprey) ]

    Gene ID: 116949378, updated on 1-Aug-2024

    Summary

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    Gene symbol
    THUMPD3
    Gene description
    THUMP domain containing 3
    See related
    EnsemblRapid:ENSPMAG00000001291
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Petromyzon marinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
    Orthologs
    human mouse all
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    Genomic context

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    See THUMPD3 in Genome Data Viewer
    Location:
    chromosome: 36
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current kPetMar1.pri (GCF_010993605.1) 36 NC_046104.1 (7613824..7626616)

    Chromosome 36 - NC_046104.1Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase-activating protein 1-like Neighboring gene KICSTOR subunit 2 Neighboring gene glutamate receptor-interacting protein 2-like Neighboring gene von Hippel-Lindau disease tumor suppressor-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046104.1 Chromosome 36 Reference kPetMar1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA (guanine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THUMP domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference kPetMar1.pri Primary Assembly

    Genomic

    1. NC_046104.1 Reference kPetMar1.pri Primary Assembly

      Range
      7613824..7626616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032966634.1 → XP_032822525.1  THUMP domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0AAJ7TT44, S4R896
      Conserved Domains (2) summary
      smart00981
      Location:211 → 287
      THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
      cl17173
      Location:297 → 477
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    2. XM_032966635.1 → XP_032822526.1  THUMP domain-containing protein 3 isoform X2

      UniProtKB/TrEMBL
      A0AAJ7TT59, S4R896
      Related
      ENSPMAP00000001427.2, ENSPMAT00000001433.2
      Conserved Domains (2) summary
      smart00981
      Location:210 → 286
      THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
      cl17173
      Location:296 → 476
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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