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    LOXHD1 lipoxygenase homology PLAT domains 1 [ Catharus ustulatus (Swainson's thrush) ]

    Gene ID: 117010547, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOXHD1
    Gene description
    lipoxygenase homology PLAT domains 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Catharus ustulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Turdidae; Catharus
    Orthologs
    human mouse all
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    Genomic context

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    See LOXHD1 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    101 current bCatUst1.pri.v2 (GCF_009819885.2) Z NC_046262.2 (2451852..2585818)
    100 previous assembly bCatUst1.pri (GCF_009819885.1) Z NC_046262.1 (2509267..2585818)

    Chromosome Z - NC_046262.2Genomic Context describing neighboring genes Neighboring gene protein inhibitor of activated STAT 2 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C Neighboring gene arkadia (RNF111) N-terminal like PKA signaling regulator 2N

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoxygenase homology domain-containing protein 1
    Names
    lipoxygenase homology domains 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Catharus ustulatus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCatUst1.pri.v2

    Genomic

    1. NC_046262.2 Reference bCatUst1.pri.v2

      Range
      2451852..2585818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033085064.2 → XP_032940955.2  lipoxygenase homology domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8C3Y5R9
      Conserved Domains (2) summary
      cd01756
      Location:836 → 956
      PLAT_repeat; PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
      cl00011
      Location:1824 → 1929
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
    Nucleotide Protein
    Heading Accession and Version

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