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    UNC13B unc-13 homolog B [ Catharus ustulatus (Swainson's thrush) ]

    Gene ID: 117010548, updated on 3-Aug-2024

    Summary

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    Gene symbol
    UNC13B
    Gene description
    unc-13 homolog B
    See related
    Ensembl:ENSCUSG00005008120
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Catharus ustulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Turdidae; Catharus
    Orthologs
    human mouse all
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    Genomic context

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    See UNC13B in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    46
    Annotation release Status Assembly Chr Location
    101 current bCatUst1.pri.v2 (GCF_009819885.2) Z NC_046262.2 (9100293..9306252)
    100 previous assembly bCatUst1.pri (GCF_009819885.1) Z NC_046262.1 (9100293..9306252)

    Chromosome Z - NC_046262.2Genomic Context describing neighboring genes Neighboring gene stomatin like 2 Neighboring gene atos homolog B Neighboring gene phospholipid-transporting ATPase ID-like Neighboring gene RUN and SH3 domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables diacylglycerol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables syntaxin-1 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dense core granule priming IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuromuscular junction development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in presynaptic dense core vesicle exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle priming IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuromuscular junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynaptic active zone cytoplasmic component IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in terminal bouton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein unc-13 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Catharus ustulatus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCatUst1.pri.v2

    Genomic

    1. NC_046262.2 Reference bCatUst1.pri.v2

      Range
      9100293..9306252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033085072.1 → XP_032940963.1  protein unc-13 homolog B isoform X6

      UniProtKB/TrEMBL
      A0A8C3V119
      Conserved Domains (6) summary
      cd04027
      Location:613 → 739
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1475 → 1594
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:931 → 1039
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1281 → 1418
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:472 → 553
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    2. XM_033085076.1 → XP_032940967.1  protein unc-13 homolog B isoform X10

      UniProtKB/TrEMBL
      A0A8C3V5S7
      Conserved Domains (6) summary
      cd04027
      Location:613 → 739
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1456 → 1575
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:931 → 1039
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1281 → 1418
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:472 → 553
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    3. XM_033085073.1 → XP_032940964.1  protein unc-13 homolog B isoform X7

      UniProtKB/TrEMBL
      A0A8C3V119
      Conserved Domains (6) summary
      cd04027
      Location:611 → 737
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1473 → 1592
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:929 → 1037
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1279 → 1416
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:470 → 551
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    4. XM_033085078.1 → XP_032940969.1  protein unc-13 homolog B isoform X11

      UniProtKB/TrEMBL
      A0A8C3V5S7
      Conserved Domains (6) summary
      cd04027
      Location:611 → 737
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1454 → 1573
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:929 → 1037
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1279 → 1416
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:470 → 551
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    5. XM_033085074.1 → XP_032940965.1  protein unc-13 homolog B isoform X8

      UniProtKB/TrEMBL
      A0A8C3V119
      Conserved Domains (6) summary
      cd04027
      Location:601 → 727
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1463 → 1582
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:919 → 1027
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1269 → 1406
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:460 → 541
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    6. XM_033085077.1 → XP_032940968.1  protein unc-13 homolog B isoform X12

      UniProtKB/TrEMBL
      A0A8C3V5S7
      Conserved Domains (6) summary
      cd04027
      Location:601 → 727
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1444 → 1563
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:919 → 1027
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1269 → 1406
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:460 → 541
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    7. XM_033085075.1 → XP_032940966.1  protein unc-13 homolog B isoform X9

      UniProtKB/TrEMBL
      A0A8C3V119
      Related
      ENSCUSP00005021549.1, ENSCUST00005022331.1
      Conserved Domains (6) summary
      cd04027
      Location:599 → 725
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1461 → 1580
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:917 → 1025
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1267 → 1404
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:458 → 539
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    8. XM_033085080.1 → XP_032940971.1  protein unc-13 homolog B isoform X13

      UniProtKB/TrEMBL
      A0A8C3V5S7
      Related
      ENSCUSP00005021575.1, ENSCUST00005022357.1
      Conserved Domains (6) summary
      cd04027
      Location:599 → 725
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08394
      Location:1 → 127
      C2A_Munc13; C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1442 → 1561
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:917 → 1025
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1267 → 1404
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:458 → 539
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins

    9. XM_033085065.2 → XP_032940956.1  protein unc-13 homolog B isoform X1

      UniProtKB/TrEMBL
      A0A8C3Y7T8
      Conserved Domains (6) summary
      cd04027
      Location:1037 → 1163
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1899 → 2018
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:1355 → 1463
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1705 → 1842
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:896 → 977
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins
      NF033609
      Location:428 → 754
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    10. XM_033085066.2 → XP_032940957.1  protein unc-13 homolog B isoform X1

      UniProtKB/TrEMBL
      A0A8C3Y7T8
      Conserved Domains (6) summary
      cd04027
      Location:1037 → 1163
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1899 → 2018
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:1355 → 1463
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1705 → 1842
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:896 → 977
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins
      NF033609
      Location:428 → 754
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    11. XM_042780182.1 → XP_042636116.1  protein unc-13 homolog B isoform X3

      UniProtKB/TrEMBL
      A0A8C3Y7T8
      Conserved Domains (6) summary
      cd04027
      Location:1035 → 1161
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1897 → 2016
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:1353 → 1461
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1703 → 1840
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:894 → 975
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins
      NF033609
      Location:428 → 754
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    12. XM_042780184.1 → XP_042636118.1  protein unc-13 homolog B isoform X5

      UniProtKB/TrEMBL
      A0A8C3Y7T8
      Conserved Domains (6) summary
      cd04027
      Location:1035 → 1161
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1878 → 1997
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:1353 → 1461
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1703 → 1840
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:894 → 975
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins
      NF033609
      Location:428 → 754
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    13. XM_042780181.1 → XP_042636115.1  protein unc-13 homolog B isoform X2

      UniProtKB/TrEMBL
      A0A8C3Y7T8
      Conserved Domains (6) summary
      cd04027
      Location:1036 → 1162
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1898 → 2017
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:1354 → 1462
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1704 → 1841
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:895 → 976
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins
      NF033609
      Location:428 → 754
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    14. XM_042780183.1 → XP_042636117.1  protein unc-13 homolog B isoform X4

      UniProtKB/TrEMBL
      A0A8C3Y7T8
      Conserved Domains (6) summary
      cd04027
      Location:1037 → 1163
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1880 → 1999
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:1355 → 1463
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1705 → 1842
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:896 → 977
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins
      NF033609
      Location:428 → 754
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    15. XM_033085067.2 → XP_032940958.1  protein unc-13 homolog B isoform X1

      UniProtKB/TrEMBL
      A0A8C3Y7T8
      Related
      ENSCUSP00005021764.1
      Conserved Domains (6) summary
      cd04027
      Location:1037 → 1163
      C2B_Munc13; C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins
      cd08395
      Location:1899 → 2018
      C2C_Munc13; C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins
      pfam06292
      Location:1355 → 1463
      DUF1041; Domain of Unknown Function (DUF1041)
      pfam10540
      Location:1705 → 1842
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
      cd20859
      Location:896 → 977
      C1_Munc13-2-like; protein kinase C conserved region 1 (C1 domain) found in Munc13-2, Munc13-3 and similar proteins
      NF033609
      Location:428 → 754
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    Nucleotide Protein
    Heading Accession and Version

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