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    TRIM46 tripartite motif containing 46 [ Lacerta agilis ]

    Gene ID: 117061948, updated on 19-Mar-2024

    Summary

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    Gene symbol
    TRIM46
    Gene description
    tripartite motif containing 46
    See related
    EnsemblRapid:ENSLAGG00000004167
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lacerta agilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacerta
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM46 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current rLacAgi1.pri (GCF_009819535.1) 17 NC_046328.1 (31254512..31279421, complement)

    Chromosome 17 - NC_046328.1Genomic Context describing neighboring genes Neighboring gene thrombospondin 3 Neighboring gene mucin 1, cell surface associated Neighboring gene keratinocyte associated protein 2 Neighboring gene dolichyl-phosphate mannosyltransferase subunit 3, regulatory

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046328.1 Chromosome 17 Reference rLacAgi1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 46

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lacerta agilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rLacAgi1.pri Primary Assembly

    Genomic

    1. NC_046328.1 Reference rLacAgi1.pri Primary Assembly

      Range
      31254512..31279421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033174957.1 → XP_033030848.1  tripartite motif-containing protein 46 isoform X1

      Related
      ENSLAGP00000004942.1, ENSLAGT00000005685.1
      Conserved Domains (7) summary
      smart00502
      Location:269 → 384
      BBC; B-Box C-terminal domain
      cd00063
      Location:443 → 523
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:530 → 733
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cd16757
      Location:27 → 69
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19786
      Location:222 → 267
      Bbox2_TRIM46_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19849
      Location:168 → 219
      Bbox1_TRIM46_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      pfam18568
      Location:372 → 421
      COS; TRIM C-terminal subgroup One Signature domain

    2. XM_033174958.1 → XP_033030849.1  tripartite motif-containing protein 46 isoform X2

      Related
      ENSLAGP00000004925.1, ENSLAGT00000005665.1
      Conserved Domains (7) summary
      smart00502
      Location:257 → 372
      BBC; B-Box C-terminal domain
      cd00063
      Location:431 → 511
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12895
      Location:518 → 721
      SPRY_PRY_TRIM46; PRY/SPRY domain in tripartite motif-containing protein 46 (TRIM46)
      cd16757
      Location:15 → 57
      RING-HC_TRIM46; RING finger, HC subclass, found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19786
      Location:210 → 255
      Bbox2_TRIM46_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      cd19849
      Location:156 → 207
      Bbox1_TRIM46_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 46 (TRIM46) and similar proteins
      pfam18568
      Location:360 → 409
      COS; TRIM C-terminal subgroup One Signature domain
    Nucleotide Protein
    Heading Accession and Version

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