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    LOC117636194 telomere repeat-binding factor 4-like [ Prunus dulcis (almond) ]

    Gene ID: 117636194, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC117636194
    Gene description
    telomere repeat-binding factor 4-like
    Locus tag
    ALMOND_2B024627
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus dulcis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC117636194 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current ALMONDv2 (GCF_902201215.1) 7 NC_047656.1 (17884745..17888670)

    Chromosome 7 - NC_047656.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 91C1-like Neighboring gene lycopene epsilon cyclase, chloroplastic Neighboring gene glycylpeptide N-tetradecanoyltransferase 1 Neighboring gene eukaryotic initiation factor 4A-2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047656.1 Chromosome 7 Reference ALMONDv2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomere repeat-binding factor 4-like
    Names
    PREDICTED: telomere repeat-binding factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ALMONDv2 Primary Assembly

    Genomic

    1. NC_047656.1 Reference ALMONDv2 Primary Assembly

      Range
      17884745..17888670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034370695.1 → XP_034226586.1  telomere repeat-binding factor 4-like

      UniProtKB/TrEMBL
      A0A4Y1RV51, A0A5E4E6A5
      Conserved Domains (2) summary
      cd11660
      Location:6 → 57
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00073
      Location:156 → 197
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    Nucleotide Protein
    Heading Accession and Version

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